Package: jtdm 0.1-3

jtdm: Joint Modelling of Functional Traits

Fitting and analyzing a Joint Trait Distribution Model. The Joint Trait Distribution Model is implemented in the Bayesian framework using conjugate priors and posteriors, thus guaranteeing fast inference. In particular the package computes joint probabilities and multivariate confidence intervals, and enables the investigation of how they depend on the environment through partial response curves. The method implemented by the package is described in Poggiato et al. (2023) <doi:10.1111/geb.13706>.

Authors:Giovanni Poggiato [aut, cre, cph]

jtdm_0.1-3.tar.gz
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jtdm.pdf |jtdm.html
jtdm/json (API)
NEWS

# Install 'jtdm' in R:
install.packages('jtdm', repos = c('https://giopogg.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/giopogg/jtdm/issues

Datasets:
  • X - Site x environmental covariates dataset
  • Y - Site x CWM traits dataset

On CRAN:

5.13 score 9 stars 7 scripts 221 downloads 9 exports 43 dependencies

Last updated 2 months agofrom:1c04e3da1d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winOKNov 08 2024
R-4.5-linuxOKNov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:ellipse_plotget_sigmagetBjoint_trait_probjoint_trait_prob_gradientjtdm_fitjtdm_predictjtdmCVpartial_response

Dependencies:clicolorspacecpp11fansifarverggforceggplot2gluegridExtragtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmniwmunsellmvtnormnlmepillarpkgconfigplyrpolyclipR6RColorBrewerRcppRcppEigenreshape2rlangscalesstringistringrsystemfontstibbletidyselecttweenrutf8vctrsviridisLitewithr

ORCHAMP_dataset

Rendered fromORCHAMP_dataset.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2023-01-23
Started: 2023-01-18