Package: jtdm 0.1-3

jtdm: Joint Modelling of Functional Traits

Fitting and analyzing a Joint Trait Distribution Model. The Joint Trait Distribution Model is implemented in the Bayesian framework using conjugate priors and posteriors, thus guaranteeing fast inference. In particular the package computes joint probabilities and multivariate confidence intervals, and enables the investigation of how they depend on the environment through partial response curves. The method implemented by the package is described in Poggiato et al. (2023) <doi:10.1111/geb.13706>.

Authors:Giovanni Poggiato [aut, cre, cph]

jtdm_0.1-3.tar.gz
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jtdm.pdf |jtdm.html
jtdm/json (API)
NEWS

# Install 'jtdm' in R:
install.packages('jtdm', repos = c('https://giopogg.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/giopogg/jtdm/issues

Pkgdown site:https://giopogg.github.io

Datasets:
  • X - Site x environmental covariates dataset
  • Y - Site x CWM traits dataset

On CRAN:

Conda:

4.95 score 9 stars 7 scripts 279 downloads 9 exports 44 dependencies

Last updated 6 months agofrom:1c04e3da1d. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 08 2025
R-4.5-winOKMar 08 2025
R-4.5-macOKMar 08 2025
R-4.5-linuxOKMar 08 2025
R-4.4-winOKMar 08 2025
R-4.4-macOKMar 08 2025
R-4.4-linuxOKMar 08 2025
R-4.3-winOKMar 08 2025
R-4.3-macOKMar 08 2025

Exports:ellipse_plotget_sigmagetBjoint_trait_probjoint_trait_prob_gradientjtdm_fitjtdm_predictjtdmCVpartial_response

Dependencies:clicolorspacecpp11fansifarverggforceggplot2gluegridExtragtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmniwmunsellmvtnormnlmepillarpkgconfigplyrpolyclipR6RColorBrewerRcppRcppEigenreshape2rlangscalesstringistringrsystemfontstibbletidyselecttweenrutf8vctrsviridisLitewithr

ORCHAMP_dataset

Rendered fromORCHAMP_dataset.Rmdusingknitr::rmarkdownon Mar 08 2025.

Last update: 2023-01-23
Started: 2023-01-18